MultiQC v1.27.1

Fixes and improvements in AI summaries:

• AI summaries should now work with bioconda install multiqc without additional dependencies
• Supporting other LLM providers with a custom endpoint passed through the command line (docs)
• Option to anonymize sample names

Feature updates and improvements

• AI summaries:

  • Add Chat with Seqera AI buttons to all summaries (#3067)
  • Add options to configure custom OpenAI endpoint (#3083)
  • Support anonymizing sample names (#3074)
  • Use tiktoken to estimate token counts for all providers (#3064)
  • Remove the dependency on langchain, openai, and anthropic packages (#3066)
  • Always save prompt to file (#3078)
  • Box plot: use statistics instead of raw values (#3077)
  • Fix for in-browser summaries: when Clear summary clicked on global, clear also the generated extended summary (#3068)
  • Make token count warning a debug (#3071)

• Improving table small scatter plots:

  • Support hide, rename, highlight (#3082)
  • Remove legend to make more space (#3081)

• Configuring from env: resolve empty to None (#3072)

• Do not print stack trace on KeyboardInterrupt unless verbose (#3063)

• Custom content:

  • Allow leading empty columns when parsing .TSV (#3059)
  • Handle empty input files (#3086)

Module updates

• Sequali: change DOI to article link (#3084)

Module fixes

• FastQC: fix Per Base Sequence Content heatmap (#3075)