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MultiQC v1.28

MultiQC

JSON schema for MultiQC config & AI summaries fixes and optimizations.

Feature updates and improvements​

  • Add JSON schema for config (#3100)
  • Allow configure dynamic toolbox settings in YAML config (#3102)
  • AI prompt optimizations (#3109)
  • Round table values for AI prompt (#3124)
  • Custom content: support .gif, .webp and .tiff (#3058)
  • Ignore *.jar files for file search (#3097)

Module updates​

  • QUAST: add ANI column (#3091)
  • Trimmomatic: use more specific search pattern (#3098)

Fixes​

  • AI in-browser summary: fix prompt for string-type cells in tables (#3096)
  • Fix generating AI summaries from custom content table with empty cells (#3095)
  • Bargraph: respect pconfig.use_legend if defined (#3112)
  • Fix warnings when read_count_multiplier: 1 (#3094)

Module fixes​

  • VEP: small fix when data in category is missing (#3116)
  • BCLConvert: fix index parsing (#3101)

Optimization, refactoring and typing​

  • Move special case modules into core (#3114)
  • Refactor plotting code to save and load input data (#3069)